10 results for "Rahmatullah"

Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins

Rahmatullah Roche; Sutanu Bhattacharya; Debswapna Bhattacharya

PLOS Computational Biology, Vol. 17 No. 2 · 2021 · English · PLOS Scopus

Crystallography and NMR system (CNS) is currently a widely used method for fragment-free ab initio protein folding from inter-residue distance or contact maps. Despite its widespread use in protein structure prediction, CNS is a decade-old macromolecular structure determination system that was…

Genome-wide association analyses for yield and yield-related traits in bread wheat ( Triticum aestivum L.) under pre-anthesis combined heat and drought stress in field conditions

Mirza Faisal Qaseem; Rahmatullah Qureshi; Humaira Shaheen et al.

PLOS ONE, Vol. 14 No. 3 · 2019 · English · PLOS Scopus

Understanding the genetic basis of heat and drought stress tolerance in wheat is prerequisite for wheat breeding program. In the present study, a wheat panel comprising of 192 elite bread wheat genotypes was phenotyped in eight environments for yield and related traits in field conditions. Four…

PolyFold: An interactive visual simulator for distance-based protein folding

Andrew J. McGehee; Sutanu Bhattacharya; Rahmatullah Roche et al.

PLOS ONE, Vol. 15 No. 12 · 2020 · English · PLOS Scopus

Recent advances in distance-based protein folding have led to a paradigm shift in protein structure prediction. Through sufficiently precise estimation of the inter-residue distance matrix for a protein sequence, it is now feasible to predict the correct folds for new proteins much more accurately…

E(3) equivariant graph neural networks for robust and accurate protein-protein interaction site prediction

Rahmatullah Roche; Bernard Moussad; Md Hossain Shuvo et al.

PLOS Computational Biology, Vol. 19 No. 8 · 2023 · English · PLOS Scopus

Artificial intelligence-powered protein structure prediction methods have led to a paradigm-shift in computational structural biology, yet contemporary approaches for predicting the interfacial residues (i.e., sites) of protein-protein interaction (PPI) still rely on experimental structures. Recent…

Genome-wide association mapping in bread wheat subjected to independent and combined high temperature and drought stress

Mirza Faisal Qaseem; Rahmatullah Qureshi; Quddoos H. Muqaddasi et al.

PLOS ONE, Vol. 13 No. 6 · 2018 · English · PLOS Scopus

Most investigations to date aiming to identify the genetic basis of the stress response of wheat (Triticum aestivum L.) have focused on the response to single stress agents such as high temperature or drought, even though in the natural situation, these stresses tend often to occur together. Here…

Ethnomedicinal appraisal of plants used for the treatment of gastrointestinal complaints by tribal communities living in Diamir district, Western Himalayas, Pakistan

Rahmat Wali; Muhammad Faraz Khan; Ansar Mahmood et al.

PLOS ONE, Vol. 17 No. 6 · 2022 · English · PLOS Scopus

Majority of the mountain dwelling communities living in the Himalayas rely on traditional herbal medicines for primary healthcare needs. Present study was conducted in fairy meadows and allied valleys in District Diamir, Gilgit Baltistan autonomous territory in northern Pakistan. Documentation of…

Correction: Duration of physical activity, sitting, sleep and the risk of total knee replacement among Chinese in Singapore, the Singapore Chinese Health Study

Ying Ying Leung; Hamid Rahmatullah Bin Abd Razak; Mohammad Talaei et al.

PLOS ONE, Vol. 13 No. 10 · 2018 · English · PLOS Scopus

Duration of physical activity, sitting, sleep and the risk of total knee replacement among Chinese in Singapore, the Singapore Chinese Health Study

Ying Ying Leung; Hamid Rahmatullah Bin Abd Razak; Mohammad Talaei et al.

PLOS ONE, Vol. 13 No. 9 · 2018 · English · PLOS Scopus

Objectives: While the effect of physical activity on knee osteoarthritis (KOA) remains controversial, how sitting and sleep durations affect KOA is unknown. We evaluated the association between durations of physical activity, sitting and sleep, and incidence of total knee replacement (TKR) due to…

Extending thermotolerance to tomato seedlings by inoculation with SA1 isolate of Bacillus cereus and comparison with exogenous humic acid application

Muhammad Aaqil Khan; Sajjad Asaf; Abdul Latif Khan et al.

PLOS ONE, Vol. 15 No. 4 · 2020 · English · PLOS Scopus

Heat stress is one of the major abiotic stresses that impair plant growth and crop productivity. Plant growth-promoting endophytic bacteria (PGPEB) and humic acid (HA) are used as bio-stimulants and ecofriendly approaches to improve agriculture crop production and counteract the negative effects of…

Ethnobotanical study of Mandi Ahmad Abad, District Okara, Pakistan

Mubashrah Munir; Sehrish Sadia; Adnan Khan et al.

PLOS ONE, Vol. 17 No. 4 · 2022 · English · PLOS Scopus

This study hypothesized that native people have unique traditional knowledge of plant resources in the rural areas and basic objective was the documentation of this valuable inheritance. Ethnobotanical data was collected from a remote rural area of Mandi Ahmad Abad, Union council number NA-144…