14 hasil untuk "Seon-In Yeom"
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Artikel Jurnal
Global co-expression network for key factor selection on environmental stress RNA-seq dataset in Capsicum annuum
…of the underlying stress responses at the molecular level is needed. In this study, to identify critical genetic factors associated with environmental stress responses, the entire 737.3 Gb clean RNA-seq dataset across abiotic, biotic stress, and phytohormone conditions in Capsicum annuum was used…
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Artikel Jurnal
Genome-wide Identification, Classification, and Expression Analysis of the Receptor-Like Protein Family in Tomato
Receptor-like proteins (RLPs) are involved in plant development and disease resistance. Only some of the RLPs in tomato (Solanum lycopersicum L.) have been functionally characterized though 176 genes encoding RLPs, which have been identified in the tomato genome. To further understand the role of…
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Artikel Jurnal
Genome-wide Comparative Analyses Reveal the Dynamic Evolution of Nucleotide-Binding Leucine-Rich Repeat Gene Family among Solanaceae Plants
…leucine-rich repeat (NLR) immune receptors are known play critical roles in effector-triggered immunity (ETI) plant defense. We performed genome-wide identification and classification of NLR-coding sequences from the genomes of pepper, tomato, and potato using fixed criteria. We then compared…
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Artikel Jurnal
Beyond NGS data sharing for plant ecological resilience and improvement of agronomic traits
Abstract Decoding complex plant omics is essential for advancing our understanding of plant biology, evolution, and breeding as well as for practical applications in agriculture, conservation, and biotechnology. The advent of Next-Generation Sequencing (NGS) has revolutionized global plant genomic…
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Artikel Jurnal Teks lengkap
Tissue-Specific RNA-Seq Analysis and Identification of Receptor-Like Proteins Related to Plant Growth in Capsicum annuum
Receptor-like proteins (RLPs) are a gene family of cell surface receptors that are involved in plant growth, development, and disease resistance. In a recent study, 438 pepper RLP genes were identified in the Capsicum annuum genome (CaRLPs) and determined to be present in response to multiple…
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Artikel Jurnal
The landscape of abiotic and biotic stress-responsive splice variants with deep RNA-seq datasets in hot pepper
Abstract Alternative splicing (AS) is a widely observed phenomenon in eukaryotes that plays a critical role in development and stress responses. In plants, the large number of RNA-seq datasets in response to different environmental stressors can provide clues for identification of…
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Artikel Jurnal
Fine mapping and candidate gene analysis of Bwr-6 conferring bacterial wilt resistance in tomato
…Bwr-6 and Bwr-12, conferring resistance to bacterial wilt were identified in Solanum lycopersicum ‘Hawaii 7996′. However, the large size of these QTL intervals has limited candidate gene identification. In this study, F2–F5 populations derived from a cross between the resistant cultivar Hawaii 7996…
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Artikel Jurnal
Comprehensive transcriptome resource for response to phytohormone-induced signaling in Capsicum annuum L.
Abstract Objectives Phytohormones are small signaling molecules with crucial roles in plant growth, development, and environmental adaptation to biotic and abiotic stress responses. Despite several previously published molecular studies focused on plant hormones, our understanding of the…
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Artikel Jurnal
BSA-seq-based identification of candidates associated with stable resistance to Ralstonia pseudosolanacearum in pepper
…resistance and its genetic basis remain insufficiently characterized. In this study, 63 pepper accessions were screened for bacterial wilt resistance using a leaf-to-whole plant bioassay. Based on disease severity index values, seven accessions were classified as extremely resistant (ER), 25 as…
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Artikel Jurnal Teks lengkap
The Hot Pepper ( Capsicum annuum ) MicroRNA Transcriptome Reveals Novel and Conserved Targets: A Foundation for Understanding MicroRNA Functional Roles in Hot Pepper
MicroRNAs (miRNAs) are a class of non-coding RNAs approximately 21 nt in length which play important roles in regulating gene expression in plants. Although many miRNA studies have focused on a few model plants, miRNAs and their target genes remain largely unknown in hot pepper (Capsicum annuum)…
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Artikel Jurnal
Use of a Secretion Trap Screen in Pepper Following Phytophthora capsici Infection Reveals Novel Functions of Secreted Plant Proteins in Modulating Cell Death
In plants, the primary defense against pathogens is mostly inducible and associated with cell wall modification and defense-related gene expression, including many secreted proteins. To study the role of secreted proteins, a yeast-based signal-sequence trap screening was conducted with the RNA from…
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Artikel Jurnal
Bacillus velezensis YC7010 Enhances Plant Defenses Against Brown Planthopper Through Transcriptomic and Metabolic Changes in Rice
Brown planthopper (BPH; Nilaparvata lugens Stål) is one of the most serious insect pests, which reduce rice yield remarkably in many rice-growing areas. A few plant growth-promoting rhizobacteria induce systemic resistance against herbivorous insects. Here we show that root drenching of rice…
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Artikel Jurnal
New reference genome sequences of hot pepper reveal the massive evolution of plant disease-resistance genes by retroduplication
Abstract Background Transposable elements are major evolutionary forces which can cause new genome structure and species diversification. The role of transposable elements in the expansion of nucleotide-binding and leucine-rich-repeat proteins (NLRs), the major disease-resistance gene families, has…