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Journal of Open Research Software
Scopus
ISSN 2049-9647 · Ubiquity Press · 400 artikel di indeks
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Artikel Jurnal
imbalanced-learn-extra: A Python Package for Novel Oversampling Algorithms
Learning from imbalanced data is a common challenge in supervised learning, as most classifiers assume balanced class distributions. Among the strategies to mitigate this issue, oversampling algorithms offer a flexible and model-agnostic solution by generating synthetic samples for minority…
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Artikel Jurnal
mPickle: Pickle for MicroPython
The rapid deployment of AI and ML at the far edge, particularly on microcontrollers, requires efficient serialization of complex data structures. Python’s pickle module is widely used but lacks native support in MicroPython, hindering seamless data transfer. We introduce mPickle, a…
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Artikel Jurnal
AgroEcoMetrics: A Python Toolkit for Modeling and Visualizing Agricultural Microclimates
AgroEcoMetrics is an open-source Python package for loading, transforming, and modeling agricultural microclimate data. This package includes tools for processing time-series weather data, modeling air and soil temperatures, estimating evapotranspiration and photoperiods, and calculating and…
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ArcLP: A Matlab Implementation of an 𝒪(√nL) Arc-search Infeasible Interior-Point Algorithm for Linear Programming
This paper presents a Matlab implementation of an arc-search infeasible interior-point algorithm for linear programming (LP), which has a proven polynomial bound of 𝒪(√nL), the best among all interior-point algorithms for LP. Software architecture and major functions are discussed. Its ease of use…
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Artikel Jurnal
LASPATED: A Library for the Analysis of Spatio-Temporal Discrete Data
In many settings, a user would like to use data of events that occur at points in space and time to estimate the intensity or rate of these events as a function of space and time. A nonhomogeneous Poisson process is a stochastic point process over space and/or time that is entirely specified by its…
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Artikel Jurnal
KernelPopper: A Scikit-Learn Compatible Package That Calculates Feature Weights From Trained Kernel Ridge Regression Models
Kernel Ridge Regression (KRR) models extend linear least squares regression using the “kernel trick” to learn non-linear relationships between input and target variables. During ordinary least squares regression training, the model learns by determining a weight for each feature that captures its…
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Artikel Jurnal
BickGraphing: Web-Based Application for Visual Inspection of Audio Recordings
BickGraphing is a browser-based research tool that enables visual inspection of acoustic recordings. The tool was built in support of visualising crop-feeding pest sounds in support of the Insect Eavesdropper project; however, it is widely applicable to all audio visualisations in research. It…
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Artikel Jurnal
A Python Package for Distance-Based Generalized Sensitivity Analysis (DGSA)
Distance-based Generalized Sensitivity Analysis (DGSA) is a global sensitivity analysis method that quantifies single parameter sensitivities as well as two-way parameter interactions. One of the main advantages is that it can provide sensitivity analyses where the amount of model evaluation needed…
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Artikel Jurnal
microTorch: A Software Package for Fast and Flexible Self-Supervised Diffusion MRI Model Fitting
The microTorch software package allows for the fast and flexible fitting of a wide range of multi-compartment microstructure models to diffusion magnetic resonance imaging (dMRI) data. It employs a self-supervised learning approach, which enables the speed gains of deep learning whilst minimising…
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Artikel Jurnal
GravDyn: A Python Framework for Gravitational Modeling of Irregular Celestial Bodies Using Polyhedral, Mascon, and Series Expansion Methods
GravDyn is an open-source Python package for computing gravitational potentials and accelerations around irregular celestial bodies. It implements three approaches within the same workflow: the constant-density polyhedral method, a layered mascon approximation based on tetrahedral decomposition…
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Artikel Jurnal
Isotope Spectrum Builder: An Application for Modeling Gamma-Ray Spectra of Common Isotopes Using Monte Carlo Pools and Experimental Backgrounds
The Isotope Spectrum Builder is an open-source software framework for generating realistic gamma-ray spectra by combining physics-based Monte Carlo signal event pools with experimentally derived background radiation data. Signal events are generated offline using detailed Geant4 simulations and…
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Artikel Jurnal
CodeEntropy: A Python Package for Multiscale Cell Correlation Entropy Estimation from Molecular Dynamics Simulations
CodeEntropy is an open-source Python package implementing the multiscale cell correlation (MCC) method for estimating entropy directly from molecular dynamics (MD) simulations. The software provides a modular, configuration-driven framework in which MCC calculations are expressed as a…
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Artikel Jurnal
MIFCSheet: An Open-Source Progressive Web Application for Vegetation Inventory Data Collection
Vegetation inventories are commonly recorded on paper in the field and digitized later, adding time and introducing transcription errors. This paper presents MIFCSheet, an open-source progressive web application for in-situ forest inventory data collection. The software enables offline data…
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Artikel Jurnal
VAP2D: A Program for Quantitative Analysis of 2D Vessel Images
Vessel analysis is crucial in fields such as medical imaging and biomedical engineering. This study introduces VAP2D (two-dimensional vessel analysis program), an open-source, cross-platform, user-friendly software available on GitHub for the quantitative analysis of 2D vessel images. VAP2D enables…
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Artikel Jurnal
RColSim: An R-Based Open-Source Regional Water Management Model for the Columbia River Basin
We present RColSim, a script-based water management model that simulates the operation of reservoir systems of the Columbia River Basin located in the Pacific Northwest. The model simulates the operation of 46 major storage and run-of-the-river dams on the Columbia River, given rule curves and flow…
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Artikel Jurnal
MOLTSA: An R Shiny Platform for Molten-Salt Thermochemical Data Management, Analysis, and Assessment
MOLTSA (a portmanteau of molten salt) is an R-based, browser-accessible software platform for molten salt thermodynamics that integrates data access, visualization, and model evaluation to support thermochemical assessments. It renders experimental literature data alongside modeled phase equilibria…
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Artikel Jurnal
Timeline-kun: A GUI Application for Time-Managed Protocols in Human-Subject Research
Timeline-kun is a desktop Graphical User Interface (GUI) application for planning, executing, and documenting time-managed protocols in human-subject research. Schedules are defined in a simple CSV format editable in spreadsheet software, a text editor, or within the application, then visualized as…
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Artikel Jurnal
Fast-ER: GPU-Accelerated Record Linkage and Deduplication in Python
Fast-ER is a Python package for GPU-accelerated record linkage and deduplication. These tasks involve computing string similarity metrics for all pairs of values within or between datasets. While these individual calculations are simple, the number of comparisons grows quadratically with dataset…
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Artikel Jurnal
SAMannot: A Memory-Efficient, Local, Open-Source Framework for Interactive Video Instance Segmentation Based on SAM2
Current research workflows for precise video segmentation are often forced into a compromise between labor-intensive manual curation, costly commercial platforms, and/or privacy-compromising cloud-based services. The demand for high-fidelity video instance segmentation in research is often hindered…
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Artikel Jurnal
Poriscope: A Configurable Pipeline for Nanopore Data Analysis
While a common workflow for data analysis exists in the nanopore research field, limitations remain. Notably, the fragmentation of methods and tools hinders interoperability and limits broader collaboration. Poriscope addresses these challenges by providing a unifying, modular framework for the…