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Virus Evolution
Scopus
ISSN 2057-1577 · University of Oxford · 3 articles in the index
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Journal Article Full text
Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool
The response of the global virus genomics community to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic has been unprecedented, with significant advances made towards the 'real-time' generation and sharing of SARS-CoV-2 genomic data. The rapid growth in virus genome data…
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Journal Article Full text
Temporal signal and the phylodynamic threshold of SARS-CoV-2
Abstract The ongoing SARS-CoV-2 outbreak marks the first time that large amounts of genome sequence data have been generated and made publicly available in near real time. Early analyses of these data revealed low sequence variation, a finding that is consistent with a recently emerging outbreak…
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Journal Article Full text
RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets
For the past 20 years, the recombination detection program (RDP) project has focused on the development of a fast, flexible, and easy to use Windows-based recombination analysis tool. Whereas previous versions of this tool have relied on considerable user-mediated verification of detected…