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  1. Journal Article Full text

    Evolutionary and Physiological Importance of Hub Proteins

    Nizar N Batada; Laurence D Hurst; Mike Tyers

    PLoS Computational Biology, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    It has been claimed that proteins with more interaction partners (hubs) are both physiologically more important (i.e., less dispensable) and, owing to an assumed high density of binding sites, slow evolving. Not all analyses, however, support these results, probably because of biased and less-than…

  2. Journal Article Full text

    Neofunctionalization in Vertebrates: The Example of Retinoic Acid Receptors

    Hector Escriva; Stéphanie Bertrand; Pierre Germain et al.

    PLoS Genetics, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    Understanding the role of gene duplications in establishing vertebrate innovations is one of the main challenges of Evo-Devo (evolution of development) studies. Data on evolutionary changes in gene expression (i.e., evolution of transcription factor-cis-regulatory elements relationships) tell only…

  3. Journal Article Full text

    E. coli Microcosms Indicate a Tight Link between Predictability of Ecosystem Dynamics and Diversity

    Marianne Imhof; Christian Schlötterer

    PLoS Genetics, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    The diversity-stability hypothesis proposes that ecosystem diversity is positively correlated with stability. The impact of ecosystem diversity is, however, still debated. In a microcosm experiment using diverged Escherichia coli cells, we show that the fitness of community members depends on the…

  4. Journal Article Full text

    Genetic Regulation of Unsaturated Fatty Acid Composition in C. elegans

    Trisha J Brock; John Browse; Jennifer L Watts

    PLoS Genetics, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    Delta-9 desaturases, also known as stearoyl-CoA desaturases, are lipogenic enzymes responsible for the generation of vital components of membranes and energy storage molecules. We have identified a novel nuclear hormone receptor, NHR-80, that regulates delta-9 desaturase gene expression in…

  5. Journal Article Full text

    In Vivo Robustness Analysis of Cell Division Cycle Genes in Saccharomyces cerevisiae

    Hisao Moriya; Yuki Shimizu-Yoshida; Hiroaki Kitano

    PLoS Genetics, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    Intracellular biochemical parameters, such as the expression level of gene products, are considered to be optimized so that a biological system, including the parameters, works effectively. Those parameters should have some permissible range so that the systems have robustness against…

  6. Journal Article Full text

    Drosophila CENP-A Mutations Cause a BubR1- Dependent Early Mitotic Delay without Normal Localization of Kinetochore Components

    Michael D Blower; Tanya Daigle; Thom Kaufman et al.

    PLoS Genetics, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    The centromere/kinetochore complex plays an essential role in cell and organismal viability by ensuring chromosome movements during mitosis and meiosis. The kinetochore also mediates the spindle attachment checkpoint (SAC), which delays anaphase initiation until all chromosomes have achieved…

  7. Journal Article Full text

    Modeling Chromosomes in Mouse to Explore the Function of Genes, Genomic Disorders, and Chromosomal Organization

    Véronique Brault; Patricia Pereira; Arnaud Duchon et al.

    PLoS Genetics, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    One of the challenges of genomic research after the completion of the human genome project is to assign a function to all the genes and to understand their interactions and organizations. Among the various techniques, the emergence of chromosome engineering tools with the aim to manipulate large…

  8. Journal Article Full text

    Carrageenan Is a Potent Inhibitor of Papillomavirus Infection

    Christopher B Buck; Cynthia D Thompson; Jeffrey N Roberts et al.

    PLoS Pathogens, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    Certain sexually transmitted human papillomavirus (HPV) types are causally associated with the development of cervical cancer. Our recent development of high-titer HPV pseudoviruses has made it possible to perform high-throughput in vitro screens to identify HPV infection inhibitors. Comparison of…

  9. Journal Article Full text

    DC-SIGN on B Lymphocytes Is Required For Transmission of HIV-1 to T Lymphocytes

    Giovanna Rappocciolo; Paolo Piazza; Craig L Fuller et al.

    PLoS Pathogens, Vol. 2 No. 7 · 2006 · English · PLOS Scopus

    Infection of T cells by HIV-1 can occur through binding of virus to dendritic cell (DC)-specific ICAM-3 grabbing nonintegrin (DC-SIGN) on dendritic cells and transfer of virus to CD4+ T cells. Here we show that a subset of B cells in the blood and tonsils of normal donors expressed DC-SIGN, and…

  10. Journal Article Full text

    Wnt Sets the Stage for Spinal Cord Patterning in the Chick

    Françoise Chanut

    PLoS Biology, Vol. 4 No. 8 · 2006 · English · PLOS Scopus

  11. Journal Article Full text

    An Early Role for Wnt Signaling in Specifying Neural Patterns of Cdx and Hox Gene Expression and Motor Neuron Subtype Identity

    Ulrika Nordström; Esther Maier; Thomas M Jessell et al.

    PLoS Biology, Vol. 4 No. 8 · 2006 · English · PLOS Scopus

    The link between extrinsic signaling, progenitor cell specification and neuronal subtype identity is central to the developmental organization of the vertebrate central nervous system. In the hindbrain and spinal cord, distinctions in the rostrocaudal identity of progenitor cells are associated…

  12. Journal Article Full text

    Compensatory Growth Impairs Adult Cognitive Performance

    Michael O Fisher; Ruedi G Nager; Pat Monaghan

    PLoS Biology, Vol. 4 No. 8 · 2006 · English · PLOS Scopus

    Several studies have demonstrated that poor early nutrition, followed by growth compensation, can have negative consequences later in life. However, it remains unclear whether this is attributable to the nutritional deficit itself or a cost of compensatory growth. This distinction is important to…

  13. Journal Article Full text

    Repression of Smoothened by Patched-Dependent (Pro-)Vitamin D3 Secretion

    Maarten F Bijlsma; C. Arnold Spek; Danica Zivkovic et al.

    PLoS Biology, Vol. 4 No. 8 · 2006 · English · PLOS Scopus

    The developmentally important hedgehog (Hh) pathway is activated by binding of Hh to patched (Ptch1), releasing smoothened (Smo) and the downstream transcription factor glioma associated (Gli) from inhibition. The mechanism behind Ptch1-dependent Smo inhibition remains unresolved. We now show that…

  14. Journal Article Full text

    Aberrant Receptor-Mediated Endocytosis of Schistosoma mansoni Glycoproteins on Host Lipoproteins

    Hein Sprong; Monika Suchanek; Suzanne M van Dijk et al.

    PLoS Medicine, Vol. 3 No. 8 · 2006 · English · PLOS Scopus

    Background: Bilharzia is one of the major parasitic infections affecting the public health and socioeconomic circumstances in (sub) tropical areas. Its causative agents are schistosomes. Since these worms remain in their host for decades, they have developed mechanisms to evade or resist the immune…

  15. Journal Article Full text

    Inflammatory Manifestations of Experimental Lymphatic Insufficiency

    Raymond Tabibiazar; Lauren Cheung; Jennifer Han et al.

    PLoS Medicine, Vol. 3 No. 7 · 2006 · English · PLOS Scopus

    Background: Sustained lymph stagnation engenders a pathological response that is complex and not well characterized. Tissue inflammation in lymphedema may reflect either an active or passive consequence of impaired immune traffic. Methods and Findings: We studied an experimental model of acute…

  16. Journal Article Full text

    Insensitivity of Paediatric HIV-1 Subtype C Viruses to Broadly Neutralising Monoclonal Antibodies Raised against Subtype B

    Elin Solomonovna Gray; Tammy Meyers; Glenda Gray et al.

    PLoS Medicine, Vol. 3 No. 7 · 2006 · English · PLOS Scopus

    Background: A Phase I clinical trial has been proposed that uses neutralising monoclonal antibodies (MAbs) as passive immunoprophylaxis to prevent mother-to-child transmission of HIV-1 in South Africa. To assess the suitability of such an approach, we determined the sensitivity of paediatric HIV-1…

  17. Journal Article Full text

    Routine HIV Testing in Botswana: A Population-Based Study on Attitudes, Practices, and Human Rights Concerns

    Sheri D Weiser; Michele Heisler; Karen Leiter et al.

    PLoS Medicine, Vol. 3 No. 7 · 2006 · English · PLOS Scopus

    Background: The Botswana government recently implemented a policy of routine or “opt-out” HIV testing in response to the high prevalence of HIV infection, estimated at 37% of adults. Methods and Findings: We conducted a cross-sectional, population-based study of 1,268 adults from five districts in…

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